Preheat the oven to 475°F (245°C). If you have a pizza stone, heat it in the oven.
A hot surface makes a crisp crust.
Make the dough. In a bowl, whisk flours, yeast, and salt. In a cup, stir warm water with honey and olive oil. Pour wet into dry and mix until a shaggy dough forms.
Knead. Transfer to a lightly floured surface and knead 3–5 minutes until smooth.
If sticky, dust with a tiny bit more flour. If dry, wet your hands and continue.
Rest. Cover and let sit 10–20 minutes. This relaxes gluten and makes stretching easier.
For extra flavor, you can rest up to 1 hour.
Mix the sauce. Combine tomatoes, garlic, oregano, red pepper flakes, salt, and pepper. Taste and adjust seasoning.
Shape the dough. On parchment, press and stretch into a thin circle or rectangle (about 12–14 inches). Leave a slight rim for the crust.
Top lightly. Spread a thin layer of sauce.
Add half the mozzarella, then distribute chicken or beans, onions, peppers, and mushrooms. Sprinkle remaining mozzarella and Parmesan.
Bake. Slide the parchment onto the hot stone or a preheated baking sheet. Bake 10–13 minutes until the crust is browned and cheese is bubbling.
Finish. Top with fresh basil and arugula or spinach.
Drizzle with 1 tsp olive oil and add black pepper. Slice and serve hot.